Characterization of Two-Component System gene (TCS) in melatonin-treated common bean under salt and drought stress

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dc.authoridYIGIDER, Esma/0000-0002-6896-0193
dc.authoridAgar, Guleray/0000-0002-8445-5082
dc.authoridAYDIN, Murat/0000-0003-1091-0609
dc.contributor.authorKasapoglu, Ayse Gul
dc.contributor.authorIlhan, Emre
dc.contributor.authorAydin, Murat
dc.contributor.authorYigider, Esma
dc.contributor.authorInal, Behcet
dc.contributor.authorBuyuk, Ilker
dc.contributor.authorTaspinar, Mahmut Sinan
dc.date.accessioned2024-12-24T19:24:57Z
dc.date.available2024-12-24T19:24:57Z
dc.date.issued2023
dc.departmentSiirt Üniversitesi
dc.description.abstractThe two-component system (TCS) generally consists of three elements, namely the histidine kinase (HK), response regulator (RR), and histidine phosphotransfer (HP) gene families. This study aimed to assess the expression of TCS genes in P. vulgaris leaf tissue under salt and drought stress and perform a genome-wide analysis of TCS gene family members using bioinformatics methods. This study identified 67 PvTCS genes, including 10 PvHP, 38 PvRR, and 19 PvHK, in the bean genome. PvHK2 had the maximum number of amino acids with 1261, whilst PvHP8 had the lowest number with 87. In addition, their theoretical isoelectric points were between 4.56 (PvHP8) and 9.15 (PvPRR10). The majority of PvTCS genes are unstable. Phylogenetic analysis of TCS genes in A. thaliana, G. max, and bean found that PvTCS genes had close phylogenetic relationships with the genes of other plants. Segmental and tandem duplicate gene pairs were detected among the TCS genes and TCS genes have been subjected to purifying selection pressure in the evolutionary process. Furthermore, the TCS gene family, which has an important role in abiotic stress and hormonal responses in plants, was characterized for the first time in beans, and its expression of TCS genes in bean leaves under salt and drought stress was established using RNAseq and qRT-PCR analyses. The findings of this study will aid future functional and genomic studies by providing essential information about the members of the TCS gene family in beans.
dc.description.sponsorshipAtaturk University Scientific Research Project Coordination Unit [FCD-2021-9813]
dc.description.sponsorshipThis research was funded by Ataturk University Scientific Research Project Coordination Unit with project no: FCD-2021-9813.
dc.identifier.doi10.1007/s12298-023-01406-5
dc.identifier.issn0971-5894
dc.identifier.issn0974-0430
dc.identifier.pmid38162914
dc.identifier.scopus2-s2.0-85180439137
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.1007/s12298-023-01406-5
dc.identifier.urihttps://hdl.handle.net/20.500.12604/6208
dc.identifier.wosWOS:001130153800002
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofPhysiology and Molecular Biology of Plants
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241222
dc.subjectExpression profile
dc.subjectHistidine
dc.subjectMelatonin
dc.subjectPhaseolus vulgaris
dc.subjectTwo component system (TCS)
dc.titleCharacterization of Two-Component System gene (TCS) in melatonin-treated common bean under salt and drought stress
dc.typeArticle

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