Siirt Üniversitesi Kurumsal Akademik Arşivi
DSpace@Siirt, Siirt Üniversitesi tarafından doğrudan ve dolaylı olarak yayınlanan; kitap, makale, tez, bildiri, rapor, araştırma verisi gibi tüm akademik kaynakları uluslararası standartlarda dijital ortamda depolar, Üniversitenin akademik performansını izlemeye aracılık eder, kaynakları uzun süreli saklar ve telif haklarına uygun olarak Açık Erişime sunar.
Güncel Gönderiler
Mitigating drought stress in fenugreek through synergistic effects of alanine and potassium-enriched biochar
(Springer Science and Business Media LLC, 2025-02-03) Wanzheng Ma; Xinyu Fang; Mengru Qiu; Misbah Hareem; Zeki Erden; Çağdaş Can Toprak; Abdullah A. Alarfaj
Drought stress adversely affects plant growth, development, and yield. It can decrease seed germination, biomass accumulation, root proliferation, chlorophyll contents, and stomatal conductance. To overcome this critical issue, researchers suggest employing environmentally friendly approaches. The exogenous application of alanine (AL) acts as an osmolyte, which helps balance the cellular water under drought stress. It can also improve root architecture, biomass accumulation, and plant fertilizer use efficiency. Applying biochar can improve soil structure, water, and nutrient retention in soil, which are allied factors in enhancing plant growth under drought stress. Furthermore, the enrichment of potassium (K) in biochar also increases its availability to plants, directly regulating the stomatal conductance to alleviate drought stress. That's why the current study aims to explore the combined effect of AL and potassium-enriched biochar (KBC) on fenugreek cultivated under drought stress. Four levels of AL (control, 2mM, 4mM, and 6mM) were applied with 0%, 1%, and 2% KBC in three replicates. Results showed that 2mM AL + 2%KBC showed significant improvement in plant length (5.24%), plant fresh weight (25.36%), plant dry weight (16.23%), chlorophyll a (7.80%), chlorophyll b (15.83%), total chlorophyll (10.65%) over the control under drought stress. A significant increase in shoot N, P, and K concentration compared to control under drought stress also validated the effectiveness of 2mM AL + 2%KBC. In conclusion, 2mM AL + 2%KBC is an effective amendment for alleviating drought stress in fenugreeks. Under drought stress, growers are recommended to apply 2mM AL + 2%KBC to achieve better fenugreek growth.
Distribution of Heat Shock Proteins 27, 60, 70, 90 in Testis and Epididymis of the Domestic Cats (Felis catus) and Dogs (Canis lupus familiaris).
(Wiley, 2025-02) Banu Kandil; Alev Gürol Bayraktaroglu
This study aimed to examine the immunoexpression of HSP27, HSP60, HSP70, and HSP90 in the testis and epididymis of domestic cats (Felis catus) and dogs (Canis lupus familiaris). Testis and epididymis tissues from 6 adult cats and 6 adult dogs were used in this study. Immunohistochemical staining was done to determine the expression of HSPs. In cats and dogs, while HSP60 was detected only in Leydig cells, HSP90 was determined only in spermatogonia. HSP27 was observed only in smooth muscle cells of blood vessels. HSP70 was not detected in spermatocytes, spermatids, Leydig cells, or Sertoli cells, whereas HSP70 was determined in peritubular myoid cells. In addition, unlike cats, HSP70 was observed in spermatogonia of dog testes. HSP27 was determined in basal cells of the epididymal epithelium and smooth muscle cells of the ductal wall in all sections of the epididymis. However, no HSP60 was observed in the epididymis. While HSP70 was not detected in the epididymis of the cats, HSP70 was observed in basal cells of all sections of the epididymis of the dogs. While the epididymal epithelial cells showed HSP90 immunoreactivity in all parts of the epididymis, the smooth muscle cells of the ductal wall exhibited HSP90 immunoreactivity only in the cauda epididymidis. The findings of this study indicate that HSP27, HSP60, HSP70, and HSP90 exhibit different immunoexpression patterns in the testis and epididymis of cats and dogs and that these proteins play important roles in maintaining the reproductive functions of cats and dogs.
Evaluation of the Accuracy and Performance of Two Commercial Pregnancy‐Associated Glycoprotein Tests for Early Pregnancy Detection in Cows
(Wiley, 2025-01-28) Tarik Safak; Kenan Çağrı Tümer; Yağmur İpek Alp; Taha Yasin Özen; Oznur Yilmaz‐Koc
The aim of this study was to determine and compare the diagnostic accuracies of two commercial pregnancy-associated glycoprotein tests, Alertys OnFarm Pregnancy Test (AOPT) and Alertys Milk Pregnancy Test (AMPT), for early pregnancy diagnosis in dairy cattle. Holstein cows (n = 124) were used in the study. Whole blood samples were collected from the jugular vein 28 days after fixed-time artificial insemination (FTAI). In addition, teats of these cows were swabbed and milk samples were collected into sterile Falcon tubes. AOPT was performed on the farm within 2 h after whole blood collection. Milk samples for AMPT analysis were taken to the laboratory and analysed within 2 h. Transrectal ultrasonography was performed on the 32nd day after FTAI as a reference test. Comparative evaluation was made according to the AOPT and AMPT results, 28 days after FTAI. The sensitivity, specificity, accuracy, positive predictive value (PPV) and negative predictive value (NPV) for the AOPT were 92.4%, 80.0%, 87.9%, 89.0% and 85.7% and for AMPT were 97.5%, 82.2%, 91.9%, 90.6% and 94.9% respectively. Cohen's kappa statistic showed a 91.9% agreement (kappa = 0.820, p < 0.001) between the reference test and AMPT, and an 87.9% agreement (kappa = 0.735, p < 0.001) between the reference test and AOPT. AOPT and AMPT offers a reliable, non-invasive (in milk) and practical approach to pregnancy diagnosis in cows. These methods enable early pregnancy detection and can be easily integrated into farm routines, enhancing reproductive management and overall herd productivity.
Different essential oils can inhibit Candida albicans biofilm formation on acrylic resin by suppressing aspartic proteinase: In vitro and in silico approaches
(Springer Science and Business Media LLC, 2025-01-28) Nurdan Polat Sağsöz; Leyla Güven; Bahri Gür; Canan Vejselova Sezer; Mustafa Cengiz; Figen Orhan; Özlem Barış
Introduction: Cymbopogon martini, Syzygium aromaticum, and Cupressus sempervirens are used for antimicrobial purposes in the worldwide. Both their extracts and essential oil contents are rich in active ingredients.
Objective: The aim of this study was to investigate the inhibitory effect of Cymbopogon martini essential oil (CMEO), Syzygium aromaticum essential oil (SAEO) and Cupressus sempervirens essential oil (CSEO) on Candida albicans biofilm formation on heat-polymerized polymethyl methacrylate (PMMA) samples in vitro and in silico.
Materials and methods: Essential oil contents with anticandidal potential were determined by Gas Chromatography-Mass Spectrometry. Following C. albicans adhesion, PMMA samples were treated independently with Corega® and each essential oil. The anticandidal activity of the essential oils was determined by spectrophotometric absorbance measurement at 600 nm, taking into account the cultures of each sample. The cytotoxicity evaluation of essential oils was performed by MTT Colorimetric assay. The software package AutoDockTools (1.5.6) was used for the in silico studies. The effect of essential oil content on the inhibition of Secreted aspartic proteinase (SAP2) was evaluated considering the Ligand@SAP2 complex formation.
Results: 2% of CMEO and 5% of SAEO exhibited higher anticandidal activity than Corega® (p < 0.05), whereas Corega® had higher anticandidal activity than 2% and 5% of CSEO (p < 0.05). The cytotoxicity of essential oils on NIH/3T3 cells after 24 h was found to be 2.41 for CSEO, 2.84 for CMEO, and 2.85 µg/mL for SAEO. The results of the in silico study showed that citronellol from CMEO, chavibetol (m-eugenol) from SAEO and β-pinene from CSEO each had the highest effect on the inhibition of SAP2. The highest binding affinity value was found for citronellol at -5.3 kcal/mol.
Conclusions: The biofilm formation of C. albicans onto acrylic resin was inhibited by CMEO, SAEO and CSEO at a concentration of 2% through in vitro assay. The most effective inhibition was determined to be due to citronellol in CMEO through in silico analysis.
Use of fractional calculus to avoid divergence in Newton-like solver for solving one-dimensional nonlinear polynomial-based models
(Elsevier BV, 2025-04) Sania Qureshi; Amanullah Soomro; Ioannis K. Argyros; Krzysztof Gdawiec; Ali Akgül; Marwan Alquran
There are many different fields of study where nonlinear polynomial-based models arise and need to be solved, making the study of root-finding iterative solvers an important topic of research. Our goal was to use the two most significant fractional differential operators, Caputo and Riemann–Liouville, and an existing time-efficient three-step Newton-like iterative solver to address the growing interest in fractional calculus. The classical solver is preserved alongside a damping term created within it that tends to 1 as the fractional order α approaches 1. The solvers’ local and semi-local convergence are investigated, and the stability trade-off with convergence speed is discussed at length. The suggested fractional-order solvers are tested on a number of nonlinear one-dimensional polynomial-based problems that come up in image processing, mechanical design, and civil engineering, such as beam deflection; and many more.
