Transcriptome - Scale characterization of salt responsive bean TCP transcription factors

Basit Öğe Kaydı
dc.authoridILHAN, EMRE/0000-0002-8404-7900
dc.contributor.authorIlhan, Emre
dc.contributor.authorBuyuk, Ilker
dc.contributor.authorInal, Behcet
dc.date.accessioned2024-12-24T19:27:08Z
dc.date.available2024-12-24T19:27:08Z
dc.date.issued2018
dc.departmentSiirt Üniversitesi
dc.description.abstractTEOSINTE-BRANCHED1/CYCLOIDEA/PCF (TCP) proteins are important regulators of growth and developmental processes including branching, floral organ morphogenesis and leaf growth as well as stress response. This study identified 27 TCP genes of Phaseolus vulgaris (common bean), which were divided into three clusters based on phylogenetic relationship. In addition, this study showed that some of TCP genes such as Pvul-TCP-4 and Pvul-TCP-15 located on chromosomes 3 and 7, Pvul-TCP-7 and Pvul-TCP-20 located on chromosome 7 and 9, were segmentally duplicated. On the other hand, a total of 20 Pvul-TCP genes have predicted to be targeted by microRNAs (miRNA). Most of the miRNA-target genes were Pvul-TCP-1,-11,-13 and -27, which were targeted by 13, 17, 22 and 13 plant miRNAs, respectively. miR319 was one of the highly represented regulatory miRNAs to target TCP transcripts. Promoter region analysis of TCP genes resulted that the GT-1 motif, which was related to salt stress, was found in 14 different Pvul-TCP genes. Expression profiling of 10 Pvul-TCP genes based on RNA-sequencing data further confirmed with quantitative real-time RT-PCR measurements identified that Pvul-TCP genes under salt stress are expressed in a cultivar- and tissue-specific manner.
dc.identifier.doi10.1016/j.gene.2017.11.021
dc.identifier.endpage73
dc.identifier.issn0378-1119
dc.identifier.issn1879-0038
dc.identifier.pmid29129811
dc.identifier.scopus2-s2.0-85033666163
dc.identifier.scopusqualityQ2
dc.identifier.startpage64
dc.identifier.urihttps://doi.org/10.1016/j.gene.2017.11.021
dc.identifier.urihttps://hdl.handle.net/20.500.12604/6523
dc.identifier.volume642
dc.identifier.wosWOS:000423892700009
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherElsevier
dc.relation.ispartofGene
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_20241222
dc.subjectPhaseolus vulgaris
dc.subjectGene expression
dc.subjectSalt stress
dc.subjectTranscription factor
dc.titleTranscriptome - Scale characterization of salt responsive bean TCP transcription factors
dc.typeArticle

Dosyalar

Koleksiyon

WOS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu