Transcriptome analysis of wheat inoculated with Fusarium graminearum

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dc.authoridILHAN, EMRE/0000-0002-8404-7900
dc.authoridAkdogan, Guray/0000-0002-1192-3615
dc.authoridUNVER, Turgay/0000-0001-6760-443X
dc.contributor.authorErayman, Mustafa
dc.contributor.authorTurktas, Mine
dc.contributor.authorAkdogan, Guray
dc.contributor.authorGurkok, Tugba
dc.contributor.authorInal, Behcet
dc.contributor.authorIshakoglu, Emre
dc.contributor.authorIlhan, Emre
dc.date.accessioned2024-12-24T19:31:05Z
dc.date.available2024-12-24T19:31:05Z
dc.date.issued2015
dc.departmentSiirt Üniversitesi
dc.description.abstractPlants are frequently exposed to microorganisms like fungi, bacteria, and viruses that cause biotic stresses. Fusarium head blight (FHB) is an economically risky wheat disease, which occurs upon Fusarium graminearum (Fg) infection. Moderately susceptible (cv. Mizrak 98) and susceptible (cv. Gun 91) winter type bread wheat cultivars were subjected to transcriptional profiling after exposure to Fg infection. To examine the early response to the pathogen in wheat, we measured gene expression alterations in mock and pathogen inoculated root crown of moderately susceptible (MS) and susceptible cultivars at 12 hours after inoculation (hai) using 12X135K microarray chip. The transcriptome analyses revealed that out of 39,179 transcripts, 3668 genes in microarray were significantly regulated at least in one time comparison. The majority of differentially regulated transcripts were associated with disease response and the gene expression mechanism. When the cultivars were compared, a number of transcripts and expression alterations varied within the cultivars. Especially membrane related transcripts were detected as differentially expressed. Moreover, diverse transcription factors showed significant fold change values among the cultivars. This study presented new insights to understand the early response of selected cultivars to the Fg at 12 hai. Through the KEGG analysis, we observed that the most altered transcripts were associated with starch and sucrose metabolism and gluconeogenesis pathways.
dc.description.sponsorshipMustafa Kemal University Scientific Research [11241]; Turkish Academy of Sciences within the framework of the GEBIP program
dc.description.sponsorshipWe wish to thank Prof. Dr. Berna Tunali (Dept. of Plant Protection, Faculty of Agriculture, University of 19 Mayis) for Fg. And Dr. Mortaza Hajyzadeh for his kind help during array hybridization and analysis. This study was supported by Mustafa Kemal University Scientific Research (Project No: 11241) and the Turkish Academy of Sciences within the framework of the GEBIP program.
dc.identifier.doi10.3389/fpls.2015.00867
dc.identifier.issn1664-462X
dc.identifier.pmid26539199
dc.identifier.scopus2-s2.0-84947794533
dc.identifier.scopusqualityQ1
dc.identifier.urihttps://doi.org/10.3389/fpls.2015.00867
dc.identifier.urihttps://hdl.handle.net/20.500.12604/7811
dc.identifier.volume6
dc.identifier.wosWOS:000364345300001
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherFrontiers Media Sa
dc.relation.ispartofFrontiers in Plant Science
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241222
dc.subjectearly response
dc.subjectFusarium graminearum
dc.subjectgene expression profiling
dc.subjectmicroarray
dc.subjectTriticum aestivum L
dc.titleTranscriptome analysis of wheat inoculated with Fusarium graminearum
dc.typeArticle

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