Genetic, haplotype and phylogenetic analysis of Ligula intestinalis by using mt-CO1 gene marker: ecological implications, climate change and eco-genetic diversity

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dc.contributor.authorSelcuk, M.A.
dc.contributor.authorCelik, F.
dc.contributor.authorSimsek, S.
dc.contributor.authorAhmed, H.
dc.contributor.authorKesik, H.K.
dc.contributor.authorKilinc, S. Gunyakti
dc.contributor.authorCao, J.
dc.date.accessioned2024-12-24T19:09:47Z
dc.date.available2024-12-24T19:09:47Z
dc.date.issued2024
dc.departmentSiirt Üniversitesi
dc.description.abstractLigula intestinalis is a cestode parasite that affects freshwater fish in different countries of the world. The current study aims to reveal the phylogenetic, genetic and haplotype diversity of mt-CO1 gene sequences sent to the NCBI database from different countries by using in-silico analysis. The 105 mt-CO1 (371 bp) gene sequences of L. intestinalis obtained from NCBI were used for bioinformatics analyses. Sequences were subjected to phylogenetic and haplotype analysis. As a result of the haplotype analysis of L. intestinalis, 38 haplotypes were obtained from 13 different countries. Hap24 constituted 44.76% of the obtained haplotype network. Changes in nucleotides between haplotypes occurred at 1-84 different points. China and Turkey have highest fixation index (Fst) values of 0.59761, while the lowest (-0.10526) was found between Russia and Turkey. This study provides a baseline for future studies on extensive scale on the epidemiology, ecological aspects, distribution pattern, transmission dynamics and population dispersion of L. intestinalis worldwide. © 2024, Instituto Internacional de Ecologia. All rights reserved.
dc.description.sponsorshipThree-Year Public Health Action Plan of Shanghai, (2020-2022, GWV-10.1-XK13); National Natural Science Foundation of China, NSFC, (81772225, 81971969)
dc.identifier.doi10.1590/1519-6984.258626
dc.identifier.issn1519-6984
dc.identifier.pmid35703625
dc.identifier.scopus2-s2.0-85132179047
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org10.1590/1519-6984.258626
dc.identifier.urihttps://hdl.handle.net/20.500.12604/3777
dc.identifier.volume84
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherInstituto Internacional de Ecologia
dc.relation.ispartofBrazilian Journal of Biology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241222
dc.subjectgenetic variation
dc.subjectin-silico analysis
dc.subjectLigula intestinalis
dc.subjectmt-CO1
dc.titleGenetic, haplotype and phylogenetic analysis of Ligula intestinalis by using mt-CO1 gene marker: ecological implications, climate change and eco-genetic diversity
dc.title.alternativeAnálise genética, haplótipo e filogenética de Ligula intestinalis usando marcador do gene mt-CO1: implicações ecológicas, mudanças climáticas e diversidade ecogenética
dc.typeArticle

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