In silico analysis of drought responsive transposons and transcription factors in Solanum tuberosum L.

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dc.contributor.authorTüfekçi, Ebru Derelli
dc.contributor.authorİnal, Behçet
dc.date.accessioned2024-12-24T19:16:55Z
dc.date.available2024-12-24T19:16:55Z
dc.date.issued2019
dc.departmentSiirt Üniversitesi
dc.description.abstractPotato (Solanum tuberosum L.) is the most important non-grainfood crop and is essential forglobal food security. Drought is one of the major abiotic stress factors resulting in huge yieldloss in the production of crops and similarly, it negativelly affects the tuberization, tuberyield and tuber quality of potato. Transposable elements (TEs) account for a large portion ofthe genome in many eukaryotic species. Several studies have identified the molecularmechanism that cause the activation of TEs under stress. Stresses and environmentalchallenges, in particular, are known to alter the expression or stimulate the transposition ofmobile elements in plants. Transcription of these stress-responsive genes is largelycontrolled by transcription factors (TFs). A number of transcription factors playing anessential role in drought tolerance of plants have been identified in the past few years. Inthis work, a subset of drought responsive TE families and TFs in potato at tuber bulking stagewas defined, based on genome-wide transposon homology and annotation. Our resultsindicated that, the read numbers for TE subfamilies yielded different distributions betweenDNA and RNA transposons. In addition, many TFs such as bHLH, WRKY, NAC, AP2/ERF mayhave important functions in regulation of drought tolerance in potato. Identification of TEsand TFs which are taking part in stress can offer useful information for functional genomicsand designing novel breeding strategies for developing stress tolerant plants.
dc.identifier.doi10.29050/harranziraat.439682
dc.identifier.endpage195
dc.identifier.issn2587-1358
dc.identifier.issue2
dc.identifier.startpage189
dc.identifier.trdizinid388944
dc.identifier.urihttps://doi.org/10.29050/harranziraat.439682
dc.identifier.urihttps://search.trdizin.gov.tr/tr/yayin/detay/388944
dc.identifier.urihttps://hdl.handle.net/20.500.12604/4654
dc.identifier.volume23
dc.indekslendigikaynakTR-Dizin
dc.language.isoen
dc.relation.ispartofHarran Tarım ve Gıda Bilimleri Dergisi
dc.relation.publicationcategoryMakale - Ulusal Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241222
dc.subjectBiyoloji,Genetik ve Kalıtım
dc.titleIn silico analysis of drought responsive transposons and transcription factors in Solanum tuberosum L.
dc.typeArticle

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